Posts by Collection

Effects of Contouring Variation on Cancer Treatment Planning

Published in Medical Physics, 2021

This paper proposes a novel methodology to quantify how target contour variations in radiotherapy affect treatment outcomes, demonstrated through a study of prostate cancer biochemical recurrence

Recommended citation: Soares Mullen, T., Jenkins, A., Johnson-Hart, C., Green, A., McWilliam, A., Aznar, M., van Herk, M., Vasquez Osorio, E. (2021). "Novel methodology to assess the effect of contouring variation on treatment outcome." Medical Physics. 48(6).
Download Paper

Inferring the Control Signal Driving Zebrafish Locomotion

Published in Computational and Systems Neuroscience (Cosyne), 2024

This paper proposes a model of zebrafish locomotion using a controlled dynamical system.

Recommended citation: Soares Mullen*, T., Schimel*, M., Hennequin, G., Machens, C., Orger, M., Jouary, A.. (2024). "Inferring the Control Signal Driving Zebrafish Locomotion." COSYNE.
Download Paper

Learning Interpretable Control Inputs and Dynamics Underlying Animal Locomotion

Published in The Twelfth International Conference on Learning Representations, 2024

This paper is about learning a latent input-driven dynamics to animal behaviour and interpretting the underlying mechanisms of movement.

Recommended citation: Soares Mullen*, T., Schimel*, M., Hennequin, G., Machens, C., Orger, M., Jouary, A.. (2024). "Learning Interpretable Control Inputs and Dynamics Underlying Animal Locomotion." The Twelfth International Conference on Learning Representations.
Download Paper

The effect of contouring variation on biochemical recurrence following prostate radiotherapy

Published: November 20, 2020

Contouring variation is one of the largest systematic uncertainties in modern radiotherapy. Many studies have evaluated inter-observer variation in small patient cohorts, yet its effect on clinical outcomes has never been analysed quantitatively. We propose a novel framework to analyse the effect of contouring variation on clinical outcome for a large cohort of patients.

Head-restrained behavioural assay to capture multi-timescale switches of fear induced states

Published: July 09, 2022

Presented a poster at Federation of European Neuroscience Society (FENS) on a novel behaviour assay that induces zebrafish larvae to undergo a cascade of behavioural states. Using optovin, a UV light flash triggers a cycle through different graded levels of fear that are reflected in different behavioural outputs, including various locomotor patterns and suppressed movement. Preliminary neural recordings show temporal similarities to the behavioural sequence, with the goal of identifying neural populations that modulate fear-related internal states.

Head-restrained behavioural assay to capture multi-timescale switches of fear induced states

Published: July 24, 2022

Presented a poster at Federation of European Neuroscience Society (FENS) on a novel behaviour assay that induces zebrafish larvae to undergo a cascade of behavioural states. Using optovin, a UV light flash triggers a cycle through different graded levels of fear that are reflected in different behavioural outputs, including various locomotor patterns and suppressed movement. Preliminary neural recordings show temporal similarities to the behavioural sequence, with the goal of identifying neural populations that modulate fear-related internal states.

Inferring control signals that drive locomotion in the larval zebrafish

Published: April 06, 2023

Gave a talk at a Workshop on Computational & Theoretical Zebrafish Neuroscience, Janelia Farm Research Center, on System Identification to learn the underlying dynamics of zebrafish larvae behaviour.

Teaching experience 1

Undergraduate course, University 1, Department, 2014

This is a description of a teaching experience. You can use markdown like any other post.

Teaching experience 2

Workshop, University 1, Department, 2015

This is a description of a teaching experience. You can use markdown like any other post.